Modeling of Bcl-2 protein suppressed calcium signaling and its global dynamics analysis

Niu Shuai; Shuai Jian-Wei; Qi Hong

doi:10.7498/aps.66.238701

Abstract

Calcium ion (Ca2+) is a signal for both life and death in cells. Either directly or indirectly, Bcl-2 protein can regulate Ca2+ release from IP3R channel, thereby determining the cell fate. In this work, based on recent experimental results, a mathematical model is constructed to describe the signaling pathway of Ca2+ release regulated by Bcl-2 indirectly. The model output fits nicely to the experimental data. The model demonstrates that Bcl-2 can suppress Ca2+ signaling. After the robustness test of the model, the roles of some key components in the signaling pathway are predicted. Two-parameter bifurcation analyses of[IP3] and [Bcl-2] are conducted to show that Bcl-2 has a crucial role in the oscillatory region of Ca2+ signaling. Single-parameter bifurcation analyses of [PP1] and [PKA] reveal that the PP1 can inhibit Ca2+ from signaling potently, while PKA only promotes Ca2+ signaling to some extent. Our model also indicates that the different combinations of concentrations of IP3, Bcl-2 and PKA generate complex regulations on Ca2+ signaling. This work not only plays a guiding role in relevant biological experiments, but also provides some insights into the treatment of diseases caused by disruption of Ca2+ homeostasis.

Keywords:

Authors and contacts

1.
Complex Systems Research Center, Shanxi University, Taiyuan 030006, China;
2.
School of Mathematical Sciences, Shanxi University, Taiyuan 030006, China;
3.
Department of Physics, Xiamen University, Xiamen 361005, China

Corresponding author: Shuai Jian-Wei, jianweishuai@xmu.edu.cn;hongqi@sxu.edu.cn ; Qi Hong, jianweishuai@xmu.edu.cn;hongqi@sxu.edu.cn

Funds: Project supported by the National Natural Science Foundation of China (Grant Nos. 11504214, 31370830, 11675134).

References

[1]	Berridge M J, Bootman M D, Roderick H L 2003 Nat. Rev. Mol. Cell Biol. 4 517
[2]	Orrenius S, Zhivotovsky B, Nicotera P 2003 Nat. Rev. Mol. Cell Biol. 4 552
[3]	Parekh A B 2011 Trends Biochem. Sci. 36 78
[4]	Gerasimenko J V, Gerasimenko O V, Palejwala A, Tepikin A V, Petersen O H, Watson A J 2002 J. Cell Sci. 115 485
[5]	Scorrano L, Oakes S A, Opferman J T, Cheng E H, Sorcinelli M D, Pozzan T, Korsmeyer S J 2003 Science 300 135
[6]	Florea A M, Splettstoesser F, Dopp E, Rettenmeier A W, Bsselberg D 2005 Toxicology 216 1
[7]	Boehning D, Patterson R L, Sedaghat L, Glebova N O, Kurosaki T, Snyder S H 2003 Nat. Cell Biol. 5 1051
[8]	Piacentini R, Gangitano C, Ceccariglia S, Fà A D, Azzena G B, Michetti F, Grassi C 2008 J. Neurochem. 105 2109
[9]	Kim I, Xu W, Reed J C 2008 Nat. Rev. Drug Discov. 7 1013
[10]	Qi H, Shuai J W 2016 Med. Hypotheses 89 28
[11]	Prole D L, Taylor C W 2016 J. Physiol. 594 2849
[12]	Foskett J K, White C, Cheung K H, Mak D O D 2007 Physiol. Rev. 87 593
[13]	Vervliet T, Parys J, Bultynck G 2016 Oncogene 35 5079
[14]	Rong Y P, Bultynck G, Aromolaran A S, Zhong F, Parys J B, de Smedt H, Mignery G A, Roderick H L, Bootman M D, Distelhorst C W 2009 Proc. Natl. Acad. Sci. USA 106 14397
[15]	Chang M J, Zhong F, Lavik A R, Parys J B, Berridge M J, Distelhorst C W 2014 Proc. Natl. Acad. Sci. USA 111 1186
[16]	Lu B Y, Yue H 2010 Acta Biophys. Sin. 26 406 (in Chinese)[鲁保云, 岳红 2010 生物物理学报 26 406]
[17]	Li X, Liu F, Shuai J W (in Chinese)[李翔, 刘锋, 帅建伟 2016 物理学报 65 178704]
[18]	Li Y X, Rinzel J 1994 J. Theor. Biol. 166 461
[19]	Ferrell J E, Ha S H 2014 Trends Biochem. Sci. 39 496
[20]	Li H, Rao A, Hogan P G 2011 Trends Cell Biol. 21 91
[21]	Yi M, Zhao Q, Tang J, Wang C 2011 Biophys. Chem. 157 33
[22]	Goldbeter A 1991 Proc. Natl. Acad. Sci. USA 88 9107
[23]	Parys J, Bezprozvanny I 1995 Cell Calcium 18 353
[24]	Svenningsson P, Nishi A, Fisone G, Girault J A, Nairn A C, Greengard P 2004 Annu. Rev. Pharmacol. Toxicol. 44 269
[25]	Shin S Y, Choo S M, Kim D, Baek S J, Wolkenhauer O, Cho K H 2006 FEBS Lett. 580 5965
[26]	Neves S R, Tsokas P, Sarkar A, Grace E A, Rangamani P, Taubenfeld S M, Alberini C M, Schaff J C, Blitzer R D, Moraru I I 2008 Cell 133 666
[27]	Lindner A U, Prehn J H, Huber H J 2013 Mol. Biosyst. 9 2359
[28]	Alzayady K J, Wang L, Chandrasekhar R, Wagner L E 2016 Sci. Signal. 9 ra35
[29]	De Young G W, Keizer J 1992 Proc. Natl. Acad. Sci. USA 89 9895
[30]	Shuai J W, Jung P 2003 Proc. Natl. Acad. Sci. USA 100 506
[31]	Qi H, Li L X, Shuai J W 2015 Sci. Rep. 5 7984
[32]	Sneyd J, Han J M, Wang L, Chen J, Yang X, Tanimura A, Sanderson M J, Kirk V, Yule D I 2017 Proc. Natl. Acad. Sci. USA 114 1456
[33]	Alon U 2007 Nat. Rev. Genet. 8 450
[34]	Dyachok O, Gylfe E 2004 J. Biol. Chem. 279 45455
[35]	Chaloux B, Caron A Z, Guillemette G 2007 Biol. Cell 99 379
[36]	Ceulemans H, Bollen M 2004 Physiol. Rev. 84 1
[37]	Bononi A, Agnoletto C, de Marchi E, Marchi S, Patergnani S, Bonora M, Giorgi C, Missiroli S, Poletti F, Rimessi A, Pinton P 2011 Enzym. Res. 2011 329098
[38]	Tang T S, Tu H P, Wang Z N, Bezprozvanny I 2003 J. Neurosci. 23 403
[39]	Luna-Vargas M P, Chipuk J E 2016 Trends Cell Biol. 26 906
[40]	Giorgi C, Bonora M, Sorrentino G, Missiroli S, Poletti F, Suski J M, Ramirez F G, Rizzuto R, Di Virgilio F, Zito E 2015 Proc. Natl. Acad. Sci. USA 112 1779
[41]	Roderick H L, Cook S J 2008 Nat. Rev. Cancer 8 361
[42]	Monteith G R, Prevarskaya N, Roberts-Thomson S J 2017 Nat. Rev. Cancer. 17 367

Cited By

[1]	Berridge M J, Bootman M D, Roderick H L 2003 Nat. Rev. Mol. Cell Biol. 4 517
[2]	Orrenius S, Zhivotovsky B, Nicotera P 2003 Nat. Rev. Mol. Cell Biol. 4 552
[3]	Parekh A B 2011 Trends Biochem. Sci. 36 78
[4]	Gerasimenko J V, Gerasimenko O V, Palejwala A, Tepikin A V, Petersen O H, Watson A J 2002 J. Cell Sci. 115 485
[5]	Scorrano L, Oakes S A, Opferman J T, Cheng E H, Sorcinelli M D, Pozzan T, Korsmeyer S J 2003 Science 300 135
[6]	Florea A M, Splettstoesser F, Dopp E, Rettenmeier A W, Bsselberg D 2005 Toxicology 216 1
[7]	Boehning D, Patterson R L, Sedaghat L, Glebova N O, Kurosaki T, Snyder S H 2003 Nat. Cell Biol. 5 1051
[8]	Piacentini R, Gangitano C, Ceccariglia S, Fà A D, Azzena G B, Michetti F, Grassi C 2008 J. Neurochem. 105 2109
[9]	Kim I, Xu W, Reed J C 2008 Nat. Rev. Drug Discov. 7 1013
[10]	Qi H, Shuai J W 2016 Med. Hypotheses 89 28
[11]	Prole D L, Taylor C W 2016 J. Physiol. 594 2849
[12]	Foskett J K, White C, Cheung K H, Mak D O D 2007 Physiol. Rev. 87 593
[13]	Vervliet T, Parys J, Bultynck G 2016 Oncogene 35 5079
[14]	Rong Y P, Bultynck G, Aromolaran A S, Zhong F, Parys J B, de Smedt H, Mignery G A, Roderick H L, Bootman M D, Distelhorst C W 2009 Proc. Natl. Acad. Sci. USA 106 14397
[15]	Chang M J, Zhong F, Lavik A R, Parys J B, Berridge M J, Distelhorst C W 2014 Proc. Natl. Acad. Sci. USA 111 1186
[16]	Lu B Y, Yue H 2010 Acta Biophys. Sin. 26 406 (in Chinese)[鲁保云, 岳红 2010 生物物理学报 26 406]
[17]	Li X, Liu F, Shuai J W (in Chinese)[李翔, 刘锋, 帅建伟 2016 物理学报 65 178704]
[18]	Li Y X, Rinzel J 1994 J. Theor. Biol. 166 461
[19]	Ferrell J E, Ha S H 2014 Trends Biochem. Sci. 39 496
[20]	Li H, Rao A, Hogan P G 2011 Trends Cell Biol. 21 91
[21]	Yi M, Zhao Q, Tang J, Wang C 2011 Biophys. Chem. 157 33
[22]	Goldbeter A 1991 Proc. Natl. Acad. Sci. USA 88 9107
[23]	Parys J, Bezprozvanny I 1995 Cell Calcium 18 353
[24]	Svenningsson P, Nishi A, Fisone G, Girault J A, Nairn A C, Greengard P 2004 Annu. Rev. Pharmacol. Toxicol. 44 269
[25]	Shin S Y, Choo S M, Kim D, Baek S J, Wolkenhauer O, Cho K H 2006 FEBS Lett. 580 5965
[26]	Neves S R, Tsokas P, Sarkar A, Grace E A, Rangamani P, Taubenfeld S M, Alberini C M, Schaff J C, Blitzer R D, Moraru I I 2008 Cell 133 666
[27]	Lindner A U, Prehn J H, Huber H J 2013 Mol. Biosyst. 9 2359
[28]	Alzayady K J, Wang L, Chandrasekhar R, Wagner L E 2016 Sci. Signal. 9 ra35
[29]	De Young G W, Keizer J 1992 Proc. Natl. Acad. Sci. USA 89 9895
[30]	Shuai J W, Jung P 2003 Proc. Natl. Acad. Sci. USA 100 506
[31]	Qi H, Li L X, Shuai J W 2015 Sci. Rep. 5 7984
[32]	Sneyd J, Han J M, Wang L, Chen J, Yang X, Tanimura A, Sanderson M J, Kirk V, Yule D I 2017 Proc. Natl. Acad. Sci. USA 114 1456
[33]	Alon U 2007 Nat. Rev. Genet. 8 450
[34]	Dyachok O, Gylfe E 2004 J. Biol. Chem. 279 45455
[35]	Chaloux B, Caron A Z, Guillemette G 2007 Biol. Cell 99 379
[36]	Ceulemans H, Bollen M 2004 Physiol. Rev. 84 1
[37]	Bononi A, Agnoletto C, de Marchi E, Marchi S, Patergnani S, Bonora M, Giorgi C, Missiroli S, Poletti F, Rimessi A, Pinton P 2011 Enzym. Res. 2011 329098
[38]	Tang T S, Tu H P, Wang Z N, Bezprozvanny I 2003 J. Neurosci. 23 403
[39]	Luna-Vargas M P, Chipuk J E 2016 Trends Cell Biol. 26 906
[40]	Giorgi C, Bonora M, Sorrentino G, Missiroli S, Poletti F, Suski J M, Ramirez F G, Rizzuto R, Di Virgilio F, Zito E 2015 Proc. Natl. Acad. Sci. USA 112 1779
[41]	Roderick H L, Cook S J 2008 Nat. Rev. Cancer 8 361
[42]	Monteith G R, Prevarskaya N, Roberts-Thomson S J 2017 Nat. Rev. Cancer. 17 367

[1]	Xu Wei, Yang Gui-Dong, Yue Xiao-Le. P-bifurcations of a Duffing-Rayleigh vibroimpact system under stochastic parametric excitation. Acta Physica Sinica, 2016, 65(21): 210501. doi: 10.7498/aps.65.210501
[2]	Xia Xiao-Fei, Wang Jun-Song. Influence of synaptic plasticity on dynamics of neural mass model：a bifurcation study. Acta Physica Sinica, 2014, 63(14): 140503. doi: 10.7498/aps.63.140503
[3]	Jiang Hai-Bo, Li Tao, Zeng Xiao-Liang, Zhang Li-Ping. Bifurcation analysis of complex behavior in the Logistic map via periodic impulsive force. Acta Physica Sinica, 2013, 62(12): 120508. doi: 10.7498/aps.62.120508
[4]	Yu Yue, Zhang Chun, Han Xiu-Jing, Jiang Hai-Bo, Bi Qin-Sheng. Oscillations and non-smooth bifurcation analysis of Chen system with periodic switches. Acta Physica Sinica, 2013, 62(2): 020508. doi: 10.7498/aps.62.020508
[5]	Gao Chao, Bi Qin-Sheng, Zhang Zheng-Di. The oscillation and bifurcation of a switching system composed of jump circuits. Acta Physica Sinica, 2013, 62(2): 020504. doi: 10.7498/aps.62.020504
[6]	He Sheng-Zhong, Zhou Guo-Hua, Xu Jian-Ping, Bao Bo-Cheng, Yang Ping. Equivalent modeling and bifurcation analysis of V2 controlled buck converter. Acta Physica Sinica, 2013, 62(11): 110503. doi: 10.7498/aps.62.110503
[7]	Jia Hong-Yan, Chen Zeng-Qiang, Xue Wei. Analysis and circuit implementation for the fractional-order Lorenz system. Acta Physica Sinica, 2013, 62(14): 140503. doi: 10.7498/aps.62.140503
[8]	Ji Ying, Bi Qin-Sheng. Bifurcation analysis of slow-fast behavior in modified Chua's circuit. Acta Physica Sinica, 2012, 61(1): 010202. doi: 10.7498/aps.61.010202
[9]	Hu Wen, Zhao Guang-Hao, Zhang Gong, Zhang Jing-Qiao, Liu Xian-Long. Stabilities and bifurcations of sine dynamic equations on time scale. Acta Physica Sinica, 2012, 61(17): 170505. doi: 10.7498/aps.61.170505
[10]	Xu Chang-Jin. Bifurcation analysis for a delayed sea-air oscillator coupling model for the ENSO. Acta Physica Sinica, 2012, 61(22): 220203. doi: 10.7498/aps.61.220203
[11]	Tan Tao-Liang, Zhang Yao, Zhong Qing. Limit induced bifurcation due to converter transformer tap and DC controller limit. Acta Physica Sinica, 2012, 61(2): 020501. doi: 10.7498/aps.61.020501
[12]	Jiang Hai-Bo, Zhang Li-Ping, Chen Zhang-Yao, Bi Qin-Sheng. Non-smooth bifurcation analysis of Chen system via impulsive force. Acta Physica Sinica, 2012, 61(8): 080505. doi: 10.7498/aps.61.080505
[13]	Wang Fa-Qiang, Ma Xi-Kui, Yan Ye. Analysis of Hopf bifurcation in voltage-controlled boost converter under different switching frequencies. Acta Physica Sinica, 2011, 60(6): 060510. doi: 10.7498/aps.60.060510
[14]	Yang Zhuo-Qin, Guan Ting-Ting, Gan Chun-Biao, Zhang Jiao-Ying. Study on bursting of pancreatic cells in codimension-2 bifurcation regions. Acta Physica Sinica, 2011, 60(11): 110202. doi: 10.7498/aps.60.110202
[15]	Ji Ying, Bi Qin-Sheng. Non-smooth bifurcation analysis of a piecewise linear chaotic circuit. Acta Physica Sinica, 2010, 59(11): 7612-7617. doi: 10.7498/aps.59.7612
[16]	Ji Ying, Bi Qin-Sheng. Bifurcation analysis of a compound oscillator with parametric and external excitation. Acta Physica Sinica, 2009, 58(7): 4431-4438. doi: 10.7498/aps.58.4431
[17]	Zhang Qing, Wang Jie-Zhi, Chen Zeng-Qiang, Yuan Zhu-Zhi. The bifurcation analysis of a conjugate Chen chaotic system and the hyperchaos generation based on the system. Acta Physica Sinica, 2008, 57(4): 2092-2099. doi: 10.7498/aps.57.2092
[18]	Ma Shao-Juan, Xu Wei, Li Wei, Jin Yan-Fei. Period-doubling bifurcation analysis of stochastic van der Pol system via Chebyshev polynomial approximation. Acta Physica Sinica, 2005, 54(8): 3508-3515. doi: 10.7498/aps.54.3508
[19]	Li Ming, Ma Xi-Kui, Dai Dong, Zhang Hao. Analysis of bifurcation and chaos in a class of piecewise smooth systems based on symbolic sequence. Acta Physica Sinica, 2005, 54(3): 1084-1091. doi: 10.7498/aps.54.1084
[20]	. . Acta Physica Sinica, 1937, 3(1): 1-13. doi: 10.7498/aps.3.1

Catalog

Vol. 66, Issue 23 - 2017-12-05

Metrics

Abstract views: 5456
PDF Downloads: 160
Cited By: 0

姓名
邮箱
手机号码
标题
留言内容
验证码

Search

Article

留言板