A new model of collagen molecule is constructed, thus obtaining the Hamiltonian that can characterize its 3-dimensional structure properties better. The 4th Run ge-Kutta algorithm is used to numerically solve the obtained kinetic equations o f excited energy transport in the collagen molecules under an applied electric f ield. The results indicate that soliton waves of amide-I will be stimulated by t he electric field in collagen molecules with phonon emission.