The teleportation of Werner state in the graphene-based quantum channels under the dephasing environment is studied through the effective low-energy theory in this paper. The results show that the output entanglement normally reaches a higher level as the input entanglement increases, while the performance of the corresponding fidelity is opposite. Given the input state, the greater entanglement in the quantum channel can provide the higher-quality output state. For graphene-based quantum channels, the low temperature and weak Coulomb repulsive potential can decelerate the attenuation of entanglement resources in the dephasing environment. Moreover, when the temperature is lower than 40 K and the coulomb repulsive potential between electrons is less than 6 eV, the average fidelity of the output state reaches more than 80%. These results indicate that graphene has potential applications in quantum information.