-
In this work, based on the Hill dynamics and Michaelis-Menten equation, a theoretical model is built to study the influence of time delay on the oscillation dynamics of a cyclin-dependent kinase 1 (CDK1)/ anaphase-promoting complex (APC) system. The theoretical model considers the time delay in the CDK1- polo-like protein kinase (P1K1)-APC pathway. We find that under different time delay conditions, the CDK1, Plk1 and APC exhibit periodic oscillation characteristics over time, indicating cell cycle progression. With the increase of time delay, the oscillation periods and amplitudes of CDK1, Plk1 and APC increase, which indicates that the time delay will change the dynamic characteristics of the system. It implies that during the cell cycle, the status of the CDK1/APC oscillation system will show a long-term correlation with the biochemical reaction time of each component, such as CDK1, Plk1 and APC. This correlation is influenced by its past, and there is a time-delay effect. The additional correction will be made due to time delay. By investigating the time-delay effect in Gaussian white noise environment, we find that in the Gaussian white noise environment, the noise disturbance obviously changes the dynamic characteristics of CDK1 evolution with time. In a low-noise environment, the CDK1/APC system changes the oscillation amplitude or period through self-adjusting time delay, so that the system can restore the stable periodic oscillation, while in a high noise environment, CDK1 exhibits a damped oscillation, indicating that the periodic oscillation dynamics of the CDK1/APC system will be significantly changed by strong noise. In the CDK1/APC system oscillation process, the system adjusts the physiological response through a feedback mechanism. There is a time delay between the perception of the noise effect and the establishment of an appropriate physiological response. By different time delays, the system can adjust complex non-periodic chaotic rhythms with different time delays, and recover to produce a stable periodic physiological process. Owing to the time delay, the CDK1/APC oscillation system changes from the original stable oscillation to a damped oscillation, but the original oscillation mode is difficult to recover. The theoretical results further reveal the time-delay effect in cell cycle processes such as Xenopus embryos, and provide a theoretical basis for designing pathway treatment plans that regulate cell cycle and block tumor transformation.
-
Keywords:
- time delay /
- oscillatory dynamics /
- cell cycle
[1] Hartwell L H, Weinert T A 1989 Science 246 629
Google Scholar
[2] Murray A W, Kirschner M W 1989 Nature 339 275
Google Scholar
[3] Ben-Sahra I, Howell J J, Asara J M, Manning B D 2013 Science 339 1323
Google Scholar
[4] Loh X Y, Sun Q Y, Ding L W, Mayakonda A, Venkatachalam N, Yeo M S, Silva T C, Xiao J F, Doan N B, Said J W, Ran X B, Zhou S Q, Dakle P, Shyamsunder P, Koh A P F, Huang R Y J, Berman B, Tan S Y, Yang H, Lin D C, Koeffler H P 2019 Cancer Res. 80 219
[5] Goldbeter A 2002 Nature 420 238
Google Scholar
[6] Chen K C, Calzone L, Csikasz-Nagy A, Cross F R, Novak B, Tyson J J 2004 Mol. Biol. Cell 15 3841
Google Scholar
[7] Pines J 2011 Nat. Rev. Mol. Cell Biol. 12 427
[8] Kim S Y, Song E J, Lee K J, Ferrell J E 2005 Mol. Cell Biol. 25 10580
Google Scholar
[9] Murray A W, Kirschner M W 1989 Science 246 614
Google Scholar
[10] Sha W, Moore J, Chen K, Lassaletta A D, Yi C S, Tyson J J, Sible J C 2003 Proc. Natl. Acad. Sci. USA 100 975
Google Scholar
[11] Dasso M, Newport J W 1990 Cell 61 811
Google Scholar
[12] Minshull J, Sun H, Tonks N K, Murray A W 1994 Cell 79 475
Google Scholar
[13] Hara K, Tydeman P, Kirschner M 1980 Proc. Natl. Acad. Sci. USA 77 462
Google Scholar
[14] King R W, Peters J M, Tugendreich S, Rolfe M, Hieter P, Kirschner M W 1995 Cell 81 279
Google Scholar
[15] Gao Z F, Shan H, Wang H 2021 Astron Nachr. 342 369
Google Scholar
[16] Yang Q, Jr J E F 2013 Nat. Cell Biol. 15 518
[17] Doedel E J 1981 Cong. Numer. 30 265
[18] Novak B, Tyson J J 1993 J. Theor. Biol. 165 101
Google Scholar
[19] Novak B, Tyson J J 1993 J. Cell Sci. 106 1153
Google Scholar
[20] Srividhya J, Gopinathan M S 2006 J. Theor. Biol. 241 617
Google Scholar
[21] Ferrell Jr J E, Tsai T Y C, Yang Q 2011 Cell 144 18874
[22] Bae H, Go Y H, Kwon T, Sung B J, Cha H Jin 2019 Pharm. Res. 36 1
Google Scholar
[23] Seki A, Coppinger J A, Jang C Y, Yates J R, Fang G W 2008 Science 320 1655
Google Scholar
[24] Glass L, Beuter A, Larocque D 1988 Math. Biosci. 90 111
Google Scholar
[25] Zhang C, Du L P, WangT H, Yang T, Zeng C H, Wang C J 2017 Chaos, Solitons & Fractals 96 120
[26] Karamched B R, Bressloff P C 2015 Biophys. J. 108 2408
Google Scholar
[27] Steuer R 2004 J. Theor. Biol. 228 293
Google Scholar
[28] Kyrychko Y N and Schwartz I B 2018 Chaos 28 063106
Google Scholar
[29] McAdams H H, Arkin A 1999 Trends Gene. 15 65
Google Scholar
[30] Vilar J M G, Kueh H Y, Barkai N, Leibler S 2002 Proc. Natl. Acad. Sci. USA 99 5988
Google Scholar
[31] Morrison J F, Walsh C T 1988 Adv. Enzymol. Relat. Areas. Mol. Biol. 61 201
[32] Roskoski R, Ritchie P A 2001 Biochemistry 40 9329
Google Scholar
[33] Vodermaier H C 2004 Curr. Biol. 14 R787
Google Scholar
[34] Zitouni S, Nabais C, Jana S C, Guerrero A, Bettencourt-Dias M 2014 Nat. Rev. Mol. Cell Biol. 15 433
Google Scholar
[35] Glass D S, Jin X F, Riedel-Kruse I H 2021 Nat. Commun. 12 1
Google Scholar
[36] Huang B, Tian X Y, Liu F, Wang W 2016 Phys. Rev. E 94 052413
Google Scholar
[37] Ott W 2008 Comm. Math. Phys. 281 775
Google Scholar
[38] Pomerening J R, Kim S Y, Ferrell J E 2005 Cell 122 565
Google Scholar
[39] Lin K K, Young L S 2008 Nonlinearity 21 899
Google Scholar
[40] Kuznetsov A P, Turukina L V, Mosekilde E 2001 Internat. J. Bifur. Chaos Appl. Sci. Engrg. 11 1065
Google Scholar
-
图 1 CDK1-Plk1-APC信号通路模型示意图.
Figure 1. Schematic depiction of the model on CDK1-Plk1-APC pathway.
图 2 不同时间延迟条件下,
$ [{\text{CDK1}}] $ ,$ [{\text{Plk1}}] $ 与$ [{\text{APC}}] $ 随时间的演化.Figure 2. Temporal evolutions of the levels of
$ [{\text{CDK1}}] $ ,$ [{\text{Pik1}}] $ and$ [{\text{APC}}] $ at different time delays.
图 3 不同
$ {\tau _{\text{C}}} $ 条件下,$ [{\text{CDK1}}] $ 与$ [{\text{APC}}] $ 对应的相图.Figure 3. Phase plots of
$ [{\text{CDK1}}] $ vs.$ [{\text{APC}}] $ at different$ {\tau _{\text{C}}} $ .
图 4 不同
$ {\tau _{\text{A}}} $ 条件下,$ [{\text{CDK1}}] $ 与$ [{\text{APC}}] $ 对应的相图, 以及$ {\tau _{\text{A}}} = 2.0 $ 时,$ [{\text{CDK1}}] $ 与$ [{\text{APC}}] $ 随时间的演化Figure 4. Phase plots of
$ [{\text{CDK1}}] $ vs$ [{\text{APC}}] $ different$ {\tau _{\text{A}}} $ , and temporal evolutions of the levels of$ [{\text{CDK1}}] $ and$ [{\text{APC}}] $ for$ {\tau _{\text{A}}} = 2.0 $ .
图 5 噪声幅D = 0.01和D = 0.05时,
$ [{\rm{CDK1}}]$ 随时间的演化, 以及与$ [{\rm{APC}}]$ 相对应的相图Figure 5. Temporal evolutions of the levels of
$ [{\rm{CDK1}}]$ , and phase plots of$ [{\rm{CDK1}}]$ vs.$ [{\rm{APC}}]$ for D = 0.01 and D = 0.05.
图 6 不同时间延迟条件下, 噪声幅为D = 0.01和D = 0.05时,
$ [{\text{CDK1}}] $ 随时间的演化, 以及与$ [{\text{APC}}] $ 相对应的相图Figure 6. Temporal evolutions of the levels of
$ [{\text{CDK1}}] $ , and phase plots of$ [{\text{CDK1}}] $ vs.$ [{\text{APC}}] $ for D = 0.01 and D = 0.05 at different time delays.
图 7 不同时间延迟、噪声幅条件下,
$ [{\text{CDK1}}] $ ,$ [{\text{Plk1}}] $ ,$ [{\text{APC}}] $ 的功率谱密度(PSD)Figure 7. power spectral density of
$ [{\text{CDK1}}] $ ,$ [{\text{Plk1}}] $ and$ [{\text{APC}}] $ at different time delays and noise amplitudes. -
[1] Hartwell L H, Weinert T A 1989 Science 246 629
Google Scholar
[2] Murray A W, Kirschner M W 1989 Nature 339 275
Google Scholar
[3] Ben-Sahra I, Howell J J, Asara J M, Manning B D 2013 Science 339 1323
Google Scholar
[4] Loh X Y, Sun Q Y, Ding L W, Mayakonda A, Venkatachalam N, Yeo M S, Silva T C, Xiao J F, Doan N B, Said J W, Ran X B, Zhou S Q, Dakle P, Shyamsunder P, Koh A P F, Huang R Y J, Berman B, Tan S Y, Yang H, Lin D C, Koeffler H P 2019 Cancer Res. 80 219
[5] Goldbeter A 2002 Nature 420 238
Google Scholar
[6] Chen K C, Calzone L, Csikasz-Nagy A, Cross F R, Novak B, Tyson J J 2004 Mol. Biol. Cell 15 3841
Google Scholar
[7] Pines J 2011 Nat. Rev. Mol. Cell Biol. 12 427
[8] Kim S Y, Song E J, Lee K J, Ferrell J E 2005 Mol. Cell Biol. 25 10580
Google Scholar
[9] Murray A W, Kirschner M W 1989 Science 246 614
Google Scholar
[10] Sha W, Moore J, Chen K, Lassaletta A D, Yi C S, Tyson J J, Sible J C 2003 Proc. Natl. Acad. Sci. USA 100 975
Google Scholar
[11] Dasso M, Newport J W 1990 Cell 61 811
Google Scholar
[12] Minshull J, Sun H, Tonks N K, Murray A W 1994 Cell 79 475
Google Scholar
[13] Hara K, Tydeman P, Kirschner M 1980 Proc. Natl. Acad. Sci. USA 77 462
Google Scholar
[14] King R W, Peters J M, Tugendreich S, Rolfe M, Hieter P, Kirschner M W 1995 Cell 81 279
Google Scholar
[15] Gao Z F, Shan H, Wang H 2021 Astron Nachr. 342 369
Google Scholar
[16] Yang Q, Jr J E F 2013 Nat. Cell Biol. 15 518
[17] Doedel E J 1981 Cong. Numer. 30 265
[18] Novak B, Tyson J J 1993 J. Theor. Biol. 165 101
Google Scholar
[19] Novak B, Tyson J J 1993 J. Cell Sci. 106 1153
Google Scholar
[20] Srividhya J, Gopinathan M S 2006 J. Theor. Biol. 241 617
Google Scholar
[21] Ferrell Jr J E, Tsai T Y C, Yang Q 2011 Cell 144 18874
[22] Bae H, Go Y H, Kwon T, Sung B J, Cha H Jin 2019 Pharm. Res. 36 1
Google Scholar
[23] Seki A, Coppinger J A, Jang C Y, Yates J R, Fang G W 2008 Science 320 1655
Google Scholar
[24] Glass L, Beuter A, Larocque D 1988 Math. Biosci. 90 111
Google Scholar
[25] Zhang C, Du L P, WangT H, Yang T, Zeng C H, Wang C J 2017 Chaos, Solitons & Fractals 96 120
[26] Karamched B R, Bressloff P C 2015 Biophys. J. 108 2408
Google Scholar
[27] Steuer R 2004 J. Theor. Biol. 228 293
Google Scholar
[28] Kyrychko Y N and Schwartz I B 2018 Chaos 28 063106
Google Scholar
[29] McAdams H H, Arkin A 1999 Trends Gene. 15 65
Google Scholar
[30] Vilar J M G, Kueh H Y, Barkai N, Leibler S 2002 Proc. Natl. Acad. Sci. USA 99 5988
Google Scholar
[31] Morrison J F, Walsh C T 1988 Adv. Enzymol. Relat. Areas. Mol. Biol. 61 201
[32] Roskoski R, Ritchie P A 2001 Biochemistry 40 9329
Google Scholar
[33] Vodermaier H C 2004 Curr. Biol. 14 R787
Google Scholar
[34] Zitouni S, Nabais C, Jana S C, Guerrero A, Bettencourt-Dias M 2014 Nat. Rev. Mol. Cell Biol. 15 433
Google Scholar
[35] Glass D S, Jin X F, Riedel-Kruse I H 2021 Nat. Commun. 12 1
Google Scholar
[36] Huang B, Tian X Y, Liu F, Wang W 2016 Phys. Rev. E 94 052413
Google Scholar
[37] Ott W 2008 Comm. Math. Phys. 281 775
Google Scholar
[38] Pomerening J R, Kim S Y, Ferrell J E 2005 Cell 122 565
Google Scholar
[39] Lin K K, Young L S 2008 Nonlinearity 21 899
Google Scholar
[40] Kuznetsov A P, Turukina L V, Mosekilde E 2001 Internat. J. Bifur. Chaos Appl. Sci. Engrg. 11 1065
Google Scholar
DownLoad:
Catalog
Metrics
- Abstract views: 3265
- PDF Downloads: 79
- Cited By: 0
