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细菌运动中的物理生物学

司铁岩 袁军华 吴艺林 唐建新

细菌运动中的物理生物学

司铁岩, 袁军华, 吴艺林, 唐建新
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  • 细菌是一个包含从分子到宏观多尺度多系统强烈耦合的复杂生物体系. 细菌的运动行为在每一个时空尺度都蕴含有丰富的生物和物理学现象. 例如,细菌对氧气和很多化合物有很强的应激反应;细菌体内信号传感网络会影响细菌鞭毛马达的转动;纳米尺度的细菌鞭毛马达转动会影响细菌在界面附近的游动、趋化性、积聚、粘附、飞速旋转;单个细菌的活跃状态和环境的物理化学性质又会影响细菌部落的生长过程.微生物膜在空间中的扩张会形成丰富多彩的宏观自组织斑图. 细菌运动的物理生物学涉及到力学,流体和统计物理等等多个学科的研究范畴. 本文分别介绍细菌鞭毛马达、 细菌微生物膜的集群运动、细菌在界面的运动以及细菌趋化性和生化信号传感等方面的若干最新研究进展.
      通信作者: 唐建新, jay_tang@brown.edu
    • 基金项目: 美国国家自然基金(批准号:CBET 1438033)、中国科学院理论物理研究所理论物理国家重点实验室基金(批准号:Y4KF161CJ1)、中国国家留学基金、国家自然科学基金(批准号:11374282,21573214,21473152)和中国香港特区研究资助局(批准号:CUHK409713)资助的课题.
    [1]

    Glud R N, Wenzhofer F, Middelboe M, Oguri K, Turnewitsch R, Canfield D E, Kitazato H 2013 Nat. Geosci. 6 284

    [2]

    Bardy S L, Ng S Y, Jarrell K F 2004 J. Mol. Microbiol. Biotechnol. 7 41

    [3]

    Driks A, Bryan R, Shapiro L, DeRosier D J 1989 J. Mol. Biol. 206 627

    [4]

    Turner L, Ryu W S, Berg H C 2000 J. Bacteriol. 182 2793

    [5]

    Costerton J W, Stewart P S, Greenberg E P 1999 Science 284 1318

    [6]

    Donlan R M 2002 Emerg. Infect. Dis. 8 881

    [7]

    Hall-Stoodley L, Costerton J W, Stoodley P 2004 Nat. Rev. Microbiol. 2 95

    [8]

    Lpez D, Vlamakis H, Kolter R 2010 Cold Spring Harb Perspect Biol. 2 a000398

    [9]

    Wilking J N, Angelini T E, Seminaraa A, Brennera M P, Weitz D A 2011 MRS Bulletin 36 385

    [10]

    Molin S, Tolker-Nielsen T 2003 Curr Opin Biotechnol 14 255

    [11]

    Kaewkamnerdpong B, Mongkut K 2009 Innovations in Swarm Intelligence, the series Studies in Computational Intelligence, Springer Berlin Heidelberg. 248 175

    [12]

    Yang A 2015 Thesis for Bachelor of Science, Brown University

    [13]

    Berg H C 2003 Annu. Rev. Biochem. 72 19

    [14]

    Kojima S, Blair D F 2001 Biochemistry 40 13041

    [15]

    Thomas D R, Morgan D G, DeRosier D J 1999 Proc. Nat. Acad. Sci. USA 96 10134

    [16]

    Turner L, Zhang R, Darnton N C, Berg H C 2010 J. Bacteriol. 192 3259

    [17]

    Leake M C, Chandler J H, Wadhams G H, Bai F, Berry R M, Armitage J P 2006 Nature 443 355

    [18]

    Yuan J, Branch R W, Hosu B G, Berg H C 2012 Nature 484 233

    [19]

    Lele P P, Hosu B G, Berg H C 2013 Proc. Natl. Acad. Sci. USA 110 11839

    [20]

    Tipping M J, Dalelez N J, Berry R M, Armitage J P 2013 mBio 4 00551

    [21]

    Atsumi T, Maekawa Y, Yamada T, Kawagishi I, Imae Y, Homma M 1996 J. Bacteriol. 178 5024

    [22]

    Sowa Y, Hotta H, Homma M, Ishijima A 2003 J. Mol. Biol. 327 1043

    [23]

    Kudo S, Imai N, Nishitoba M, Sugiyama S, Magariyama Y 2005 FEMS Microbiol. Lett. 242 221

    [24]

    Goto T, Nakata K, Baba K, Nishimura M, Magariyama Y 2005 Biophys. J. 893771

    [25]

    Carnazza S, Satriano C, Guglielmino S, Marletta G 2005 J. Colloid Interface Sci. 289 386

    [26]

    Sauer K, Camper A K, Ehrlich G D, Costerton J W, Davies D G 2002 J. Bacteriol. 184 1140

    [27]

    Skerker J M, Berg H C 2001 Proc. Nat. Acad. Sci. USA 98 6901

    [28]

    O'Toole G A, Kolter R 1998 Mol. Microbiol. 30 295

    [29]

    Brun Y V, Janakiraman R 2000 Dimorphic life cycles of Caulobacter and stalked bacteria. In: Yves VB, Larry S, editors. Prokaryotic Development: ASM Press; 2000. p. 297.

    [30]

    Li G L, Smith C S, Brun Y V, Tang J X 2005 J. Bacteriol. 187 257

    [31]

    Poindexter J S 1964 Bacteriol. Rev. 28 231

    [32]

    Wu M, Roberts J W, Kim S, Koch D L, DeLisa M P 2006 Appl. Environ. Microbiol. 72 4987

    [33]

    Lemelle L, Palierne J F, Chatre E, Place C 2010 J. Bacteriol. 192 6307

    [34]

    Hodges K, Hecht G 2013 Curr Opin Gastroenterol 29 159

    [35]

    Swiecicki J M, Sliusarenko O, Weibel D B 2013 Integr. Biol. 5 1490

    [36]

    Pratt L A, Kolter R 1998 Mol. Microbiol. 30 285

    [37]

    Mello B A, Tu Y 2007 Biophys. J. 92 2329

    [38]

    Hansen C H, Endres R G, Wingreen N S 2008 PLoS Comput. Biol. 4 e1

    [39]

    Xie L, Altindal T, Chattopadhyay S, Wu X L 2011 Proc. Natl. Acad. Sci. USA 108 2246

    [40]

    Son K, Guasto J S, Stocker R 2013 Nat. Phys. 9 5

    [41]

    Locsei J T 2007 J. Math. Biol. 55 41

    [42]

    Bodenmiller D, Toh E, Brun Y V 2004 J. Bacteriol. 186 1438

    [43]

    An Y H, Friedman R J 1998 J. Biomed. Mater. Res. 43 338

    [44]

    Busscher HJ, van Der Mei HC. Use of flow chamber devices and image analysis methods to study microbial adhesion. Meth. Enzym. Academic Press; 1995. p 455.

    [45]

    Lee L K, Ginsburg M A, Crovace C, Donohoe M, Stock D 2010 Nature 466 996

    [46]

    Bai F, Branch R W, Nicolau D V, Pilizota J T, Steel B C, Maini P K, Berry R M 2010 Science 327 685

    [47]

    Morse M, Bell J, Li G, Tang J X 2015 Phys. Rev. Lett. 115 198103

    [48]

    Kim M, Powers T R 2004 Phys. Rev. E 69 061910

    [49]

    Morse M, Huang A, Li G, Maxey M R, Tang J X 2013 Biophys. J. 105 21

    [50]

    Vigeant M A S, Ford R M 1997 Appl. Environ. Microbiol. 63 3474

    [51]

    Vigeant M A S, Roseanne M F, Michael W, Tamm L K 2002 Appl. Environ. Microbiol. 68 2794

    [52]

    Vigeant M A S, Wagner M, Tamm L K, Ford R M 2001 Langmuir 17 2235

    [53]

    Li G, Tang J X 2009 Phys. Rev. Lett. 103 078101

    [54]

    Berke A P, Turner L, Berg H C, Lauga E 2008 Phys. Rev. Lett. 101 038102

    [55]

    Marchetti M C, Joanny J F, Ramaswamy S, Liverpool T B, Prost J, Rao M, Simha R A 2013 Rev. Mod. Phys. 85 1143

    [56]

    Li G, Bensson J, Nisimova L, Munger D, Mahautmr P, Tang J X, Maxey M R, Brun Y V 2011 Phys. Rev. E 84041932

    [57]

    Drescher K, Dunkel J, Cisneros L H, Ganguly S, Goldstein R E 2011 Proc. Natl. Acad. Sci. USA 108 10940

    [58]

    Frymier P D, Ford R M, Berg H C, Cummings P T 1995 Proc. Natl. Acad. Sci. USA 92 6195

    [59]

    Magariyama Y, Ichiba M, Nakata K, Baba K, Ohtani T, Kudo S, Goto T 2005 Biophys. J. 88 3648

    [60]

    Li G L, Tam L K, Tang J X 2008 Proceedings of the National Academy of Sciences of the United States of America 105 18355

    [61]

    Li G, Brown P J, Tang J X, Xu J, Quardokus E M, Fuqua C, Brun Y V 2012 Mol Microbiol 83 41

    [62]

    Pushkar P L, Thibault R, Abhishek S, Chen Y, Berg H C 2016 Nat. Phys. 12 175

    [63]

    Li G L, Tam L K, Tang J X 2008 Proc. Natl. Acad. Sci. USA 105 18355

    [64]

    Costerton J W, Cheng K J, Geesey G G, Ladd T I, Nickel J C, Dasgupta M, Marrie T J 1987 Annu Rev Microbiol 41 435

    [65]

    VanGestel J, Vlamakis H, Kolter R 2015 PLOS Biol. 13 e1002141

    [66]

    Parsek M, Singh P 2003 Annu. Rev. Microbiol. 57 677

    [67]

    Wu Y L 2015 Quant. Biol. 3 199

    [68]

    Copeland M F, Weibel D B 2009 Soft Matter 5 1174

    [69]

    Ramaswamy S 2010 Annu. Rev. Cond. Mat. Phys. 1 323

    [70]

    Jimenez P N, Koch G, Papaioannou E, Wahjudi M, Krzeslak J, Coenye T, et al. 2010 Microbiology 156 49

    [71]

    Prigent-Combaret C, Prensier G, Le Thi T T, Vidal O, Lejeune P, Dorel C 2000 Environ. Microbiol. 2 450

    [72]

    Wolfe A J, Visick K L 2008 J. Bacteriol. 190 463

    [73]

    Danese P N, Pratt L A, Kolter R 2000 J. Bacteriol. 182 3593

    [74]

    Vlamakis H, Aguilar C, Losick R, Kolter R 2008 Genes. Dev. 22 945

    [75]

    Allison C, Lai H C, Gygi D, Hughes C 1993 Mol. Microbiol. 8 53

    [76]

    Harshey R M, Matsuyama T 1994 Proc. Natl. Acad. Sci. USA 91 8631

    [77]

    Allison C, Hughes C 1991 Sci. Prog. 75 403

    [78]

    Harshey R M 2003 Annu. Rev. Microbiol. 57 249

    [79]

    Henrichsen J 1972 Bacteriol. Rev. 36 478

    [80]

    Kearns D B 2010 Nat. Rev. Microbiol. 8 634

    [81]

    McCarter L L 2004 J. Mol. Microbiol. Biotechnol. 7 18

    [82]

    Verstraeten N, Braeken K, Debkumari B, Favart M, Fransaer J, Vermant J, Michiels J 2008 Trends Microbiol. 16 496

    [83]

    Hamze K, Autret S, Hinc K, Laalami S, Julkowska D, Briandet R, Renault M, Absalon C, Holland IB, Putzer H, Sror SJ 2011 Microbiology 157 2456

    [84]

    Kaiser D 2007 Curr. Biol. 17 R561

    [85]

    Kerr B, Riley M A, Feldman M W, Bohannan B J M 2002 Nature 418 171

    [86]

    Struthers J K, Westran R P. Clinical Bacteriology: CRC Press; 2003.

    [87]

    Zhang H P, Be'er A, Smith R S, Florin E L, Swinney H L 2009 EPL 87 48011

    [88]

    Darnton N C, Turner L, Rojevsky S, Berg H C 2010 Biophys. J. 98 2082

    [89]

    Zhang H P, Be'er A, Florin E L, Swinney H L 2010 Proc. Natl. Acad. Sci. USA 107 13626

    [90]

    Be'er A, Strain SK, Hernndez R A, Ben-Jacob E, Florin E L 2013 J. Bacteriol. 195 2709

    [91]

    Wu Y, Hosu B G, Berg H C 2011 Proc. Natl. Acad. Sci. USA 108 4147

    [92]

    Mariconda S, Wang Q, Harshey R M 2006 Mol. Microbiol. 60 1590

    [93]

    Peruani F, Deutsch A, Br M 2006 Phys. Rev. E 74 030904

    [94]

    F. B, Minamino T, Wu Z, Namba K, Xing J 2012 Phys. Rev. Lett. 108 178105

    [95]

    Ping L, Wu Y, Hosu Basarab G, Tang Jay X, Berg Howard C 2014 Biophys. J. 107 871

    [96]

    McBride M J 2004 J. Mol. Microbiol. Biotechnol. 7 63

    [97]

    Wu Y, Kaiser D, Jiang Y, Alber M 2009 Proc. Natl. Acad. Sci. USA 106 1222

    [98]

    Berleman J E, Scott J, Chumley T, Kirby J R 2008 Proc. Natl. Acad. Sci. USA 105 17127

    [99]

    Thutupalli S, Sun M, Bunyak F, Palaniappan K, Shaevitz J W 2015 J. Royal. Society. Inter. 12 0049

    [100]

    Be'er A, Ariel G, Kalisman O, Helman Y, Sirota-Madi A, Zhang H P, Florin E L, Payne S M, Ben-Jacob E, Swinney H L 2010 Proc. Natl. Acad. Sci. USA 107 6258

    [101]

    Davies D G, Parsek M R, Pearson J P, Iglewski B H, Costerton J W, Greenberg E P 1998 Science 280 295

    [102]

    Matsushita M W J, Itoha H, Watanabea K, Araia T, Matsuyamab T S H, Mimura M 1999 Physica A 274 10

    [103]

    Mezanges X, Regeard C, Gerin C, Deroulers C, Grammaticos B, Badoual M 2012 Phys. Rev. E 85 041913

    [104]

    Fauvart M, Phillips P, Bachaspatimayum D, Verstraeten N, Fransaer J, Michiels J, Vermant J 2012 Soft Matter 8 70

    [105]

    Sempels W, De Dier R, Mizuno H, Hofkens J, Vermant J 2013 Nat. Comm. 4 1757

    [106]

    Vicsek T, Zafeiris A 2012 Phys. Rep. 517 71

    [107]

    Koch D L, Subramanian G 2010 Annu. Rev. Flui. Mech. 43 637

    [108]

    Ghosh P K, Li Y, Marchesoni F, Nori F 2015 Phys. Rev. E 92 012114

    [109]

    Wang Y, Hernandez R M, Bartlett D J, Bingham J M, Kline T R, Sen A, Mallouk T E 2006 Langmuir 22 10451

    [110]

    Wu Z, Lin X, Wu Y, Si T, Sun J, He Q 2014 ACS nano 8 9

    [111]

    Shao J, Xuan M, Dai L, Si T, Li J, He Q 2015 Angew. Chem. 54 12782

    [112]

    Dombrowski C, Cisneros L, Chatkaew S, Goldstein RE, Kessler JO 2004 Phys. Rev. Lett. 93 098103

    [113]

    Discher D E, Janmey P, Wang Y L 2005 Science 310 1139

    [114]

    Prigent-Combaret C, Vidal O, Dorel C, Lejeune P 1999 J. Bacteriol. 181 5993

    [115]

    Wang Q, Frye J G, McClelland M, Harshey R M 2004 Mol. Microbiol. 52 169

    [116]

    Inoue T, Shingaki R, Hirose S, Waki K, Mori H, Fukui K 2007 J. Bacteriol. 189 950

    [117]

    Girgis H S, Liu Y, Ryu W S, Tavazoie S 2007 PLoS Genet. 3 1644

    [118]

    Vogel V 2012 Nat. Mater. 11 841

    [119]

    Yuan J H 2014 44 5 (in Chinese) [袁军华 2014 中国科学技术大学学报 44 5]

    [120]

    Hazelbauer G L, Falke J J, Parkinson J S 2008 Trends Biochem. Sci. 33 9

    [121]

    kollmann M, Lovdok L, Bartholome K, Timmer J, Sourjik V 2005 Nature 438 504

    [122]

    Alon U, Surette M G, Barkai N, Leibler S 1999 Nature 397 168

    [123]

    Segall J E, Block S M, Berg H C 1986 Proc. Natl. Acad. Sci. USA 83 8987

    [124]

    Duke T A J, Bray D 1999 Proc. Natl. Acad. Sci. USA 96 10104

    [125]

    Sourjik V, Berg H C 2002 Proc. Natl. Acad. Sci. USA 99 123

    [126]

    Tu Y 2013 Annu. Rev. Biophys. 42 337

    [127]

    Oleksiuk O, Jakovljevic V, Vladimirov N, Carvalho R, Paster E 2011 Cell 145 312

    [128]

    Si G, Wu T, Ouyang Q, Tu Y 2012 Phys. Rev. Lett. 109 048101

    [129]

    Yuan J, Berg H C 2008 Proc. Natl. Acad. Sci. USA 105 1182

    [130]

    Yuan J, Fahrner K A, Berg H C 2009 J. Mol. Biol. 390 394

    [131]

    Morse M, Colin R, Wilson L G, Tang J X 2016 Biophys. J. 110 2076

    [132]

    Schnitzer M J 1993 Phys. Rev. E 48 2553

    [133]

    Xie L, Wu X L 2014 Biophys. J. 107 1712

    [134]

    Xie L, Lu C, Wu X L 2015 Biophys J. 108 766

    [135]

    Yang Y, He J, Altindal T, Xie L, Wu X L 2015 Biophys. J. 109 1058

    [136]

    Chat H, Ginelli F, Montagne R 2006 Phys. Rev. Lett. 96 180602

    [137]

    McCandlish S R, Baskaran A, Hagan M F 2012 Soft Matter 8 2527

    [138]

    Nagai K H, Sumino Y, Montagne R, Aranson I S, Chat H 2015 Phys. Rev. Lett. 114 168001

    [139]

    Berdahl A, Torney C J, Ioannou C C, Faria J, Couzin I D 2013 Science 339 574

    [140]

    Torellaa J P, Gagliardib C J, Chena J S, Bediakob D K, Colna B, Wayc J C, Silvera P A, Nocerab D G 2014 Proc. Natl. Acad. Sci. USA 112 2337

    [141]

    Darnton N T L, Breuer K, Berg H C 2004 Biophys. J. 86 1863

    [142]

    Vogel V, Hess H 2007 Controlled Nanoscale Motion, Nobel Symposium 131 711 367

  • [1]

    Glud R N, Wenzhofer F, Middelboe M, Oguri K, Turnewitsch R, Canfield D E, Kitazato H 2013 Nat. Geosci. 6 284

    [2]

    Bardy S L, Ng S Y, Jarrell K F 2004 J. Mol. Microbiol. Biotechnol. 7 41

    [3]

    Driks A, Bryan R, Shapiro L, DeRosier D J 1989 J. Mol. Biol. 206 627

    [4]

    Turner L, Ryu W S, Berg H C 2000 J. Bacteriol. 182 2793

    [5]

    Costerton J W, Stewart P S, Greenberg E P 1999 Science 284 1318

    [6]

    Donlan R M 2002 Emerg. Infect. Dis. 8 881

    [7]

    Hall-Stoodley L, Costerton J W, Stoodley P 2004 Nat. Rev. Microbiol. 2 95

    [8]

    Lpez D, Vlamakis H, Kolter R 2010 Cold Spring Harb Perspect Biol. 2 a000398

    [9]

    Wilking J N, Angelini T E, Seminaraa A, Brennera M P, Weitz D A 2011 MRS Bulletin 36 385

    [10]

    Molin S, Tolker-Nielsen T 2003 Curr Opin Biotechnol 14 255

    [11]

    Kaewkamnerdpong B, Mongkut K 2009 Innovations in Swarm Intelligence, the series Studies in Computational Intelligence, Springer Berlin Heidelberg. 248 175

    [12]

    Yang A 2015 Thesis for Bachelor of Science, Brown University

    [13]

    Berg H C 2003 Annu. Rev. Biochem. 72 19

    [14]

    Kojima S, Blair D F 2001 Biochemistry 40 13041

    [15]

    Thomas D R, Morgan D G, DeRosier D J 1999 Proc. Nat. Acad. Sci. USA 96 10134

    [16]

    Turner L, Zhang R, Darnton N C, Berg H C 2010 J. Bacteriol. 192 3259

    [17]

    Leake M C, Chandler J H, Wadhams G H, Bai F, Berry R M, Armitage J P 2006 Nature 443 355

    [18]

    Yuan J, Branch R W, Hosu B G, Berg H C 2012 Nature 484 233

    [19]

    Lele P P, Hosu B G, Berg H C 2013 Proc. Natl. Acad. Sci. USA 110 11839

    [20]

    Tipping M J, Dalelez N J, Berry R M, Armitage J P 2013 mBio 4 00551

    [21]

    Atsumi T, Maekawa Y, Yamada T, Kawagishi I, Imae Y, Homma M 1996 J. Bacteriol. 178 5024

    [22]

    Sowa Y, Hotta H, Homma M, Ishijima A 2003 J. Mol. Biol. 327 1043

    [23]

    Kudo S, Imai N, Nishitoba M, Sugiyama S, Magariyama Y 2005 FEMS Microbiol. Lett. 242 221

    [24]

    Goto T, Nakata K, Baba K, Nishimura M, Magariyama Y 2005 Biophys. J. 893771

    [25]

    Carnazza S, Satriano C, Guglielmino S, Marletta G 2005 J. Colloid Interface Sci. 289 386

    [26]

    Sauer K, Camper A K, Ehrlich G D, Costerton J W, Davies D G 2002 J. Bacteriol. 184 1140

    [27]

    Skerker J M, Berg H C 2001 Proc. Nat. Acad. Sci. USA 98 6901

    [28]

    O'Toole G A, Kolter R 1998 Mol. Microbiol. 30 295

    [29]

    Brun Y V, Janakiraman R 2000 Dimorphic life cycles of Caulobacter and stalked bacteria. In: Yves VB, Larry S, editors. Prokaryotic Development: ASM Press; 2000. p. 297.

    [30]

    Li G L, Smith C S, Brun Y V, Tang J X 2005 J. Bacteriol. 187 257

    [31]

    Poindexter J S 1964 Bacteriol. Rev. 28 231

    [32]

    Wu M, Roberts J W, Kim S, Koch D L, DeLisa M P 2006 Appl. Environ. Microbiol. 72 4987

    [33]

    Lemelle L, Palierne J F, Chatre E, Place C 2010 J. Bacteriol. 192 6307

    [34]

    Hodges K, Hecht G 2013 Curr Opin Gastroenterol 29 159

    [35]

    Swiecicki J M, Sliusarenko O, Weibel D B 2013 Integr. Biol. 5 1490

    [36]

    Pratt L A, Kolter R 1998 Mol. Microbiol. 30 285

    [37]

    Mello B A, Tu Y 2007 Biophys. J. 92 2329

    [38]

    Hansen C H, Endres R G, Wingreen N S 2008 PLoS Comput. Biol. 4 e1

    [39]

    Xie L, Altindal T, Chattopadhyay S, Wu X L 2011 Proc. Natl. Acad. Sci. USA 108 2246

    [40]

    Son K, Guasto J S, Stocker R 2013 Nat. Phys. 9 5

    [41]

    Locsei J T 2007 J. Math. Biol. 55 41

    [42]

    Bodenmiller D, Toh E, Brun Y V 2004 J. Bacteriol. 186 1438

    [43]

    An Y H, Friedman R J 1998 J. Biomed. Mater. Res. 43 338

    [44]

    Busscher HJ, van Der Mei HC. Use of flow chamber devices and image analysis methods to study microbial adhesion. Meth. Enzym. Academic Press; 1995. p 455.

    [45]

    Lee L K, Ginsburg M A, Crovace C, Donohoe M, Stock D 2010 Nature 466 996

    [46]

    Bai F, Branch R W, Nicolau D V, Pilizota J T, Steel B C, Maini P K, Berry R M 2010 Science 327 685

    [47]

    Morse M, Bell J, Li G, Tang J X 2015 Phys. Rev. Lett. 115 198103

    [48]

    Kim M, Powers T R 2004 Phys. Rev. E 69 061910

    [49]

    Morse M, Huang A, Li G, Maxey M R, Tang J X 2013 Biophys. J. 105 21

    [50]

    Vigeant M A S, Ford R M 1997 Appl. Environ. Microbiol. 63 3474

    [51]

    Vigeant M A S, Roseanne M F, Michael W, Tamm L K 2002 Appl. Environ. Microbiol. 68 2794

    [52]

    Vigeant M A S, Wagner M, Tamm L K, Ford R M 2001 Langmuir 17 2235

    [53]

    Li G, Tang J X 2009 Phys. Rev. Lett. 103 078101

    [54]

    Berke A P, Turner L, Berg H C, Lauga E 2008 Phys. Rev. Lett. 101 038102

    [55]

    Marchetti M C, Joanny J F, Ramaswamy S, Liverpool T B, Prost J, Rao M, Simha R A 2013 Rev. Mod. Phys. 85 1143

    [56]

    Li G, Bensson J, Nisimova L, Munger D, Mahautmr P, Tang J X, Maxey M R, Brun Y V 2011 Phys. Rev. E 84041932

    [57]

    Drescher K, Dunkel J, Cisneros L H, Ganguly S, Goldstein R E 2011 Proc. Natl. Acad. Sci. USA 108 10940

    [58]

    Frymier P D, Ford R M, Berg H C, Cummings P T 1995 Proc. Natl. Acad. Sci. USA 92 6195

    [59]

    Magariyama Y, Ichiba M, Nakata K, Baba K, Ohtani T, Kudo S, Goto T 2005 Biophys. J. 88 3648

    [60]

    Li G L, Tam L K, Tang J X 2008 Proceedings of the National Academy of Sciences of the United States of America 105 18355

    [61]

    Li G, Brown P J, Tang J X, Xu J, Quardokus E M, Fuqua C, Brun Y V 2012 Mol Microbiol 83 41

    [62]

    Pushkar P L, Thibault R, Abhishek S, Chen Y, Berg H C 2016 Nat. Phys. 12 175

    [63]

    Li G L, Tam L K, Tang J X 2008 Proc. Natl. Acad. Sci. USA 105 18355

    [64]

    Costerton J W, Cheng K J, Geesey G G, Ladd T I, Nickel J C, Dasgupta M, Marrie T J 1987 Annu Rev Microbiol 41 435

    [65]

    VanGestel J, Vlamakis H, Kolter R 2015 PLOS Biol. 13 e1002141

    [66]

    Parsek M, Singh P 2003 Annu. Rev. Microbiol. 57 677

    [67]

    Wu Y L 2015 Quant. Biol. 3 199

    [68]

    Copeland M F, Weibel D B 2009 Soft Matter 5 1174

    [69]

    Ramaswamy S 2010 Annu. Rev. Cond. Mat. Phys. 1 323

    [70]

    Jimenez P N, Koch G, Papaioannou E, Wahjudi M, Krzeslak J, Coenye T, et al. 2010 Microbiology 156 49

    [71]

    Prigent-Combaret C, Prensier G, Le Thi T T, Vidal O, Lejeune P, Dorel C 2000 Environ. Microbiol. 2 450

    [72]

    Wolfe A J, Visick K L 2008 J. Bacteriol. 190 463

    [73]

    Danese P N, Pratt L A, Kolter R 2000 J. Bacteriol. 182 3593

    [74]

    Vlamakis H, Aguilar C, Losick R, Kolter R 2008 Genes. Dev. 22 945

    [75]

    Allison C, Lai H C, Gygi D, Hughes C 1993 Mol. Microbiol. 8 53

    [76]

    Harshey R M, Matsuyama T 1994 Proc. Natl. Acad. Sci. USA 91 8631

    [77]

    Allison C, Hughes C 1991 Sci. Prog. 75 403

    [78]

    Harshey R M 2003 Annu. Rev. Microbiol. 57 249

    [79]

    Henrichsen J 1972 Bacteriol. Rev. 36 478

    [80]

    Kearns D B 2010 Nat. Rev. Microbiol. 8 634

    [81]

    McCarter L L 2004 J. Mol. Microbiol. Biotechnol. 7 18

    [82]

    Verstraeten N, Braeken K, Debkumari B, Favart M, Fransaer J, Vermant J, Michiels J 2008 Trends Microbiol. 16 496

    [83]

    Hamze K, Autret S, Hinc K, Laalami S, Julkowska D, Briandet R, Renault M, Absalon C, Holland IB, Putzer H, Sror SJ 2011 Microbiology 157 2456

    [84]

    Kaiser D 2007 Curr. Biol. 17 R561

    [85]

    Kerr B, Riley M A, Feldman M W, Bohannan B J M 2002 Nature 418 171

    [86]

    Struthers J K, Westran R P. Clinical Bacteriology: CRC Press; 2003.

    [87]

    Zhang H P, Be'er A, Smith R S, Florin E L, Swinney H L 2009 EPL 87 48011

    [88]

    Darnton N C, Turner L, Rojevsky S, Berg H C 2010 Biophys. J. 98 2082

    [89]

    Zhang H P, Be'er A, Florin E L, Swinney H L 2010 Proc. Natl. Acad. Sci. USA 107 13626

    [90]

    Be'er A, Strain SK, Hernndez R A, Ben-Jacob E, Florin E L 2013 J. Bacteriol. 195 2709

    [91]

    Wu Y, Hosu B G, Berg H C 2011 Proc. Natl. Acad. Sci. USA 108 4147

    [92]

    Mariconda S, Wang Q, Harshey R M 2006 Mol. Microbiol. 60 1590

    [93]

    Peruani F, Deutsch A, Br M 2006 Phys. Rev. E 74 030904

    [94]

    F. B, Minamino T, Wu Z, Namba K, Xing J 2012 Phys. Rev. Lett. 108 178105

    [95]

    Ping L, Wu Y, Hosu Basarab G, Tang Jay X, Berg Howard C 2014 Biophys. J. 107 871

    [96]

    McBride M J 2004 J. Mol. Microbiol. Biotechnol. 7 63

    [97]

    Wu Y, Kaiser D, Jiang Y, Alber M 2009 Proc. Natl. Acad. Sci. USA 106 1222

    [98]

    Berleman J E, Scott J, Chumley T, Kirby J R 2008 Proc. Natl. Acad. Sci. USA 105 17127

    [99]

    Thutupalli S, Sun M, Bunyak F, Palaniappan K, Shaevitz J W 2015 J. Royal. Society. Inter. 12 0049

    [100]

    Be'er A, Ariel G, Kalisman O, Helman Y, Sirota-Madi A, Zhang H P, Florin E L, Payne S M, Ben-Jacob E, Swinney H L 2010 Proc. Natl. Acad. Sci. USA 107 6258

    [101]

    Davies D G, Parsek M R, Pearson J P, Iglewski B H, Costerton J W, Greenberg E P 1998 Science 280 295

    [102]

    Matsushita M W J, Itoha H, Watanabea K, Araia T, Matsuyamab T S H, Mimura M 1999 Physica A 274 10

    [103]

    Mezanges X, Regeard C, Gerin C, Deroulers C, Grammaticos B, Badoual M 2012 Phys. Rev. E 85 041913

    [104]

    Fauvart M, Phillips P, Bachaspatimayum D, Verstraeten N, Fransaer J, Michiels J, Vermant J 2012 Soft Matter 8 70

    [105]

    Sempels W, De Dier R, Mizuno H, Hofkens J, Vermant J 2013 Nat. Comm. 4 1757

    [106]

    Vicsek T, Zafeiris A 2012 Phys. Rep. 517 71

    [107]

    Koch D L, Subramanian G 2010 Annu. Rev. Flui. Mech. 43 637

    [108]

    Ghosh P K, Li Y, Marchesoni F, Nori F 2015 Phys. Rev. E 92 012114

    [109]

    Wang Y, Hernandez R M, Bartlett D J, Bingham J M, Kline T R, Sen A, Mallouk T E 2006 Langmuir 22 10451

    [110]

    Wu Z, Lin X, Wu Y, Si T, Sun J, He Q 2014 ACS nano 8 9

    [111]

    Shao J, Xuan M, Dai L, Si T, Li J, He Q 2015 Angew. Chem. 54 12782

    [112]

    Dombrowski C, Cisneros L, Chatkaew S, Goldstein RE, Kessler JO 2004 Phys. Rev. Lett. 93 098103

    [113]

    Discher D E, Janmey P, Wang Y L 2005 Science 310 1139

    [114]

    Prigent-Combaret C, Vidal O, Dorel C, Lejeune P 1999 J. Bacteriol. 181 5993

    [115]

    Wang Q, Frye J G, McClelland M, Harshey R M 2004 Mol. Microbiol. 52 169

    [116]

    Inoue T, Shingaki R, Hirose S, Waki K, Mori H, Fukui K 2007 J. Bacteriol. 189 950

    [117]

    Girgis H S, Liu Y, Ryu W S, Tavazoie S 2007 PLoS Genet. 3 1644

    [118]

    Vogel V 2012 Nat. Mater. 11 841

    [119]

    Yuan J H 2014 44 5 (in Chinese) [袁军华 2014 中国科学技术大学学报 44 5]

    [120]

    Hazelbauer G L, Falke J J, Parkinson J S 2008 Trends Biochem. Sci. 33 9

    [121]

    kollmann M, Lovdok L, Bartholome K, Timmer J, Sourjik V 2005 Nature 438 504

    [122]

    Alon U, Surette M G, Barkai N, Leibler S 1999 Nature 397 168

    [123]

    Segall J E, Block S M, Berg H C 1986 Proc. Natl. Acad. Sci. USA 83 8987

    [124]

    Duke T A J, Bray D 1999 Proc. Natl. Acad. Sci. USA 96 10104

    [125]

    Sourjik V, Berg H C 2002 Proc. Natl. Acad. Sci. USA 99 123

    [126]

    Tu Y 2013 Annu. Rev. Biophys. 42 337

    [127]

    Oleksiuk O, Jakovljevic V, Vladimirov N, Carvalho R, Paster E 2011 Cell 145 312

    [128]

    Si G, Wu T, Ouyang Q, Tu Y 2012 Phys. Rev. Lett. 109 048101

    [129]

    Yuan J, Berg H C 2008 Proc. Natl. Acad. Sci. USA 105 1182

    [130]

    Yuan J, Fahrner K A, Berg H C 2009 J. Mol. Biol. 390 394

    [131]

    Morse M, Colin R, Wilson L G, Tang J X 2016 Biophys. J. 110 2076

    [132]

    Schnitzer M J 1993 Phys. Rev. E 48 2553

    [133]

    Xie L, Wu X L 2014 Biophys. J. 107 1712

    [134]

    Xie L, Lu C, Wu X L 2015 Biophys J. 108 766

    [135]

    Yang Y, He J, Altindal T, Xie L, Wu X L 2015 Biophys. J. 109 1058

    [136]

    Chat H, Ginelli F, Montagne R 2006 Phys. Rev. Lett. 96 180602

    [137]

    McCandlish S R, Baskaran A, Hagan M F 2012 Soft Matter 8 2527

    [138]

    Nagai K H, Sumino Y, Montagne R, Aranson I S, Chat H 2015 Phys. Rev. Lett. 114 168001

    [139]

    Berdahl A, Torney C J, Ioannou C C, Faria J, Couzin I D 2013 Science 339 574

    [140]

    Torellaa J P, Gagliardib C J, Chena J S, Bediakob D K, Colna B, Wayc J C, Silvera P A, Nocerab D G 2014 Proc. Natl. Acad. Sci. USA 112 2337

    [141]

    Darnton N T L, Breuer K, Berg H C 2004 Biophys. J. 86 1863

    [142]

    Vogel V, Hess H 2007 Controlled Nanoscale Motion, Nobel Symposium 131 711 367

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  • 收稿日期:  2016-05-16
  • 修回日期:  2016-08-01
  • 刊出日期:  2016-09-05

细菌运动中的物理生物学

  • 1. 哈尔滨工业大学, 哈尔滨, 黑龙江 150001;
  • 2. 中国科学技术大学, 合肥, 安徽 230026;
  • 3. 香港中文大学及香港中文大学深圳研究院, 香港;
  • 4. 布朗大学, 普罗维登斯, 罗德岛州 02912, 美国
  • 通信作者: 唐建新, jay_tang@brown.edu
    基金项目: 

    美国国家自然基金(批准号:CBET 1438033)、中国科学院理论物理研究所理论物理国家重点实验室基金(批准号:Y4KF161CJ1)、中国国家留学基金、国家自然科学基金(批准号:11374282,21573214,21473152)和中国香港特区研究资助局(批准号:CUHK409713)资助的课题.

摘要: 细菌是一个包含从分子到宏观多尺度多系统强烈耦合的复杂生物体系. 细菌的运动行为在每一个时空尺度都蕴含有丰富的生物和物理学现象. 例如,细菌对氧气和很多化合物有很强的应激反应;细菌体内信号传感网络会影响细菌鞭毛马达的转动;纳米尺度的细菌鞭毛马达转动会影响细菌在界面附近的游动、趋化性、积聚、粘附、飞速旋转;单个细菌的活跃状态和环境的物理化学性质又会影响细菌部落的生长过程.微生物膜在空间中的扩张会形成丰富多彩的宏观自组织斑图. 细菌运动的物理生物学涉及到力学,流体和统计物理等等多个学科的研究范畴. 本文分别介绍细菌鞭毛马达、 细菌微生物膜的集群运动、细菌在界面的运动以及细菌趋化性和生化信号传感等方面的若干最新研究进展.

English Abstract

参考文献 (142)

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